Table of contents
Available modules (software)
$ module avail
Please see below for a example output containing all modules.
Search for a particular module
$ module avail afni
--- /apps/Compilers/modules-3.2.10/Debug-Build/Modules/3.2.10/modulefiles ---
Image_Analysis/AFNI
load a particular module
$ module load Image_Analysis/AFNI
List loaded modules
$ module list
Currently Loaded Modulefiles:
1) /Activeperl-5.18.4 2) /Framework/Matlab2019a
Unload all modules
$ module purge
Available modules (software)
[msalman@arclogin ~]$ module avail
----------------------------------------------------------- /apps/Compilers/modules-3.2.10/Debug-Build/Modules/3.2.10/modulefiles/ -----------------------------------------------------------
ABYSS1.3.7 BioInformatics/Samtools1.3 Compilers/singularity2.4 Image_Analysis/DTIprep
Activeperl-5.18.4 BioInformatics/Samtools1.3.1 ComputationalChemistry/amber12 Image_Analysis/Eman2
Annocript BioInformatics/Shannon0.0.1 ComputationalChemistry/amber14 Image_Analysis/Ffmpeg
Art/Praat BioInformatics/Star2.6 ComputationalChemistry/amber14_SSE3 Image_Analysis/Frealign
Bedtools2 BioInformatics/stringtie1.3.0 ComputationalChemistry/AmberTools12 Image_Analysis/Freesurfer
BioInformatics/Agalma BioInformatics/Subread1.5.0 ComputationalChemistry/AmberTools14 Image_Analysis/FSL5.0
BioInformatics/Ape5.2 BioInformatics/Subread1.6.3 ComputationalChemistry/Autodock4.2.6 Image_Analysis/FSL5.0.10
BioInformatics/Augustus2.5.5 BioInformatics/SystemPipeR ComputationalChemistry/Autodock_vina_1.1.2 Image_Analysis/FSL5.0.11
BioInformatics/Beagle BioInformatics/Tophat1.3.2 ComputationalChemistry/Diamond Image_Analysis/FSL6.0
BioInformatics/Beagle2.1.2 BioInformatics/Tophat2.1.1 ComputationalChemistry/g09 Image_Analysis/FSL-OLD
BioInformatics/Beast BioInformatics/TransDecoder ComputationalChemistry/g16 Image_Analysis/ImageMagick7.0.8
BioInformatics/Beast2.4.0 BioInformatics/TransDecoder2.0.1 ComputationalChemistry/Gromacs4.6 Image_Analysis/Mricron
BioInformatics/Bedtools2 BioInformatics/TransDecoder2.1.0 ComputationalChemistry/lammps Image_Analysis/OpenJPEG
BioInformatics/Bowtie1-1.2 BioInformatics/TransDecoder3.0.1 ComputationalChemistry/lammps2018 Image_Analysis/Openslide3.4.1
BioInformatics/Bowtie2-2.2.3 BioInformatics/TransDecoder5.0.2 ComputationalChemistry/Namd2.10 Image_Analysis/Praat
BioInformatics/Bowtie2-2.3.4 BioInformatics/TransDecoder5.5.0 ComputationalChemistry/Namd2.10-CUDA Image_Analysis/Relion
BioInformatics/Busco3.0.2 BioInformatics/TrimGalore ComputationalChemistry/Namd2.12_MPI Image_Analysis/relion1.4
BioInformatics/Cd-hit4.5.4 BioInformatics/Trinity2.1.1 ComputationalChemistry/NWchem6.6 Image_Analysis/Slicer
BioInformatics/Cd-hit4.6 BioInformatics/Trinity2.6.5 ComputationalChemistry/Sybyl Image_Analysis/Tortoise3.0.0
BioInformatics/ChimPipe BioInformatics/Trinotate2.0.2 ComputationalPhysics/ECRS2014 Image_Analysis/Tortoise3.1.0
BioInformatics/CIRCexplorer1.1.10 BioInformatics/Trinotate3.0.1 ComputationalPhysics/Geant4 Java7.0
BioInformatics/Cufflinks2.1.1 BioInformatics/Trinotate3.1.1 ComputationalPhysics/MEDYAN Java8.0
BioInformatics/Cufflinks2.2.1 BioInformatics/UCSCtools Cuda7.0 jvectormap
BioInformatics/DESeq2 BioInformatics/Xhmm cutadapt Kallisto0.42.4
BioInformatics/EdgeR Boost1.57 cvode Kobas2.0
BioInformatics/Emboss6.3.1 Boost1.58 cvs lammps
BioInformatics/FastQC0.11.5 Bowtie2-2.2.3 DeepLearning/caffe libtiff
BioInformatics/FusionQ Bridger DeepLearning/tensorflow Mathematica
BioInformatics/Gfold1.1.2 Bwa0.7.5a DeepLearning/Theano module-git
BioInformatics/hisat0.1.7 Cd-hit4.5.4 Diamond module-info
BioInformatics/Hisat2.0.5 Chlorop1.1 dot modules
BioInformatics/IGV_2.3.92 Compilers/Anaconda3.6 Framework/Activeperl-5.18.4 mpich3
BioInformatics/InterProScan-5.19-58.0 Compilers/cmake3.0.1 Framework/Boost1.66 ncbi-tools
BioInformatics/Interproscan5.26 Compilers/cmake3.15.3 Framework/Gmp6.0 null
BioInformatics/InterProScan-5.27-66.0 Compilers/cmake3.4.3 Framework/Gsl1.16 NWchem6.6
BioInformatics/InterProScan-5.28-67.0 Compilers/Cuda8.0 Framework/JAGS3.4.0 openmpi1.8.4
BioInformatics/IQ-TREE Compilers/dmtcp2.5.2 Framework/JAGS4.3.0 Parallel
BioInformatics/IQ-TREE1.5.5 Compilers/gcc-4.9.2 Framework/Mathematica ParaView
BioInformatics/Jellyfish2.2.5 Compilers/intel Framework/Matlab2015a perl-5.18.1
BioInformatics/Jellyfish2.2.7 Compilers/intel_2015 Framework/Matlab2015b Perl-5.18.4
BioInformatics/Jemalloc5.0.1 Compilers/intel_2016 Framework/Matlab2016b Plink1.07
BioInformatics/Kallisto0.42.4 Compilers/intel_2017 Framework/Matlab2019a Portrait1.1
BioInformatics/Kallisto0.42.5 Compilers/intel_2018 Framework/R/R-3.2.10 Python2.7
BioInformatics/Kallisto0.43.0 Compilers/intel_2018_Cluster Framework/R/R-3.2.10-AVX Rnammer1.2
BioInformatics/Kallisto0.44.0 Compilers/intel_MKL_2017 Framework/R/R-3.2.10-SSE3 Samtools1.2
BioInformatics/lncRNA-screen Compilers/intel_TBB_2017 Framework/R/R-3.2.10-SSE3-SLIB SAS
BioInformatics/macs2 Compilers/Julia0.4.4 Framework/R/R-3.2.3-AVX scripture
BioInformatics/MapSplice-v2.1.8 Compilers/Julia0.6.2 Framework/R/R-3.2.3-SSE3 Sickle
BioInformatics/Metis5.1.0 Compilers/Julia-AVX-0.4.4 Framework/R/R-3.3.1 SocialScience/OpenBUGS3.2.3
BioInformatics/MrBayes3.2.5 Compilers/Julia-SSE3-0.4.4 Framework/R/R-3.3.3-AVX STATA
BioInformatics/ncbi-blast2.2.30+ Compilers/maven-3.5.4 Framework/R/R-3.3.3-SSE3 Stringtie1.0.1
BioInformatics/ncbi-blast-2.2.31+ Compilers/mkl_2015 Framework/R/R-3.4.2-GNU Sybyl
BioInformatics/ncbi-blast2.3+ Compilers/MKL_2018 Framework/R/R-3.5.1-MKL-Intel SysTools/Rcolne1.42
BioInformatics/ncbi-blast2.4.0+ Compilers/mvapich2_ACoRE Framework/R/R-3.6.1 SysTools/ShowUtilization
BioInformatics/ncbi-tools Compilers/OpenMPI4.0.1 Framework/STATA13.1 SysTools/Singularity2.5.2
BioInformatics/QualiMap_v2.2.1 Compilers/PGI_v15 Framework/STATA15.1 SysTools/Singularity3.2.1
BioInformatics/Raxml8.2.8 Compilers/Python2.7 GDAL Tophat1.3.2
BioInformatics/Rnammer1.2 Compilers/Python2.7.14-UCS2 Gmp6.0 TransDecoder
BioInformatics/Rsem1.2.30 Compilers/Python2.7.14-UCS4 hmmer2.3.2 TransDecoder2.0.1
BioInformatics/Rsem1.3.0 Compilers/Python2.7-UCS4 hmmer3.1b TransDecoder3.0.0
BioInformatics/Rsem1.3.1 Compilers/Python3.5 Image_Analysis/Aeneas UCSCtools
BioInformatics/Salmon-0.8.2 Compilers/Python3.6 Image_Analysis/AFNI use.own
BioInformatics/Salmon-0.9.1 Compilers/Python3.7 Image_Analysis/caret Visualization/ParaviewServer
BioInformatics/Samtools0.1.17 Compilers/Python3.7.4 Image_Analysis/ctffind4.1.5 WFDB-10.5.24
BioInformatics/Samtools1.2 Compilers/PythonIntel3.6 Image_Analysis/dcm2niix